Glyma20g33290 - SoyBase

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Report for Sequence Feature Glyma20g33290

Feature Type:	gene_model
Chromosome:	Gm20
Start:	41875900
stop:	41877120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g33290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10520	AT	Annotation by Michelle Graham. TAIR10: haemoglobin 2 \| chr3:3276516-3277765 REVERSE LENGTH=158	SoyBase	E_val: 2.00E-44	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0015671	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxygen transport	SoyBase	N/A	ISS
GO:0019432	GO-bp	Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005344	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen transporter activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PTHR22924	Panther	LEGHEMOGLOBIN	JGI		ISS
PTHR22924:SF4	Panther	NON-SYMBIOTIC HEMOGLOBIN (RHB)	JGI		ISS
PF00042	PFAM	Globin	JGI		ISS
UniRef100_P02236	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leghemoglobin C2 n=1 Tax=Glycine max RepID=LGB2_SOYBN	SoyBase	E_val: 2.00E-98	ISS
UniRef100_P02236	UniRef	Annotation by Michelle Graham. Best UniRef hit: Leghemoglobin C2 n=1 Tax=Glycine max RepID=LGB2_SOYBN	SoyBase	E_val: 2.00E-98	ISS

Proteins Associated with Glyma20g33290

Locus	Gene Symbol	Protein Name
	Lbc2A	Leghemoglobin C2 gene A

Expression Patterns of Glyma20g33290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g33290

Paralog	Evidence	Comments
Glyma10g34260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g33290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g191200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g33290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g33290

Limit To All Plant Sequences

>Glyma20g33290.1   sequence type=CDS   gene model=Glyma20g33290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTTTCACTGAGAAGCAAGAGGCTTTGGTGAGTAGCTCATTCGAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAATGGAGTAGATCCTAGTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTTTTTGGATTGGTGCGTGACTCAGCTGGTCAACTTAAAGCAAATGGAACAGTAGTGGCTGATGCCGCACTTGGTTCTATCCATGCCCAAAAAGCAATCACTGATCCTCAGTTCGTGGTGGTTAAAGAAGCACTGCTGAAAACAATAAAGGAGGCAGTTGGGGACAAATGGAGTGATGAATTGAGCAGTGCTTGGGAAGTAGCCTATGATGAATTGGCAGCAGCTATTAAGAAGGCATTTTAG

Predicted protein sequences of Glyma20g33290

Limit To All Plant Sequences

>Glyma20g33290.1   sequence type=predicted peptide   gene model=Glyma20g33290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDPSNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAALGSIHAQKAITDPQFVVVKEALLKTIKEAVGDKWSDELSSAWEVAYDELAAAIKKAF*

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